Master bank reconciliation in FreshBooks! Learn to connect accounts, match transactions, and ensure financial accuracy to prevent errors and fraud.

Keeping your financial records accurate is the foundation of a healthy business, and bank reconciliation is a non-negotiable part of that process. Regularly comparing your bank statements to the transactions recorded in your accounting software ensures everything matches up, catching errors before they snowball. This article provides a comprehensive guide on how to perform a bank reconciliation in FreshBooks, from connecting your bank account to troubleshooting common discrepancies and adopting best practices.
Before diving into the "how," it’s important to understand the "why." Bank reconciliation is more than just an administrative chore; it's a critical financial health check. A consistent reconciliation habit provides several key benefits.
You can't reconcile your bank transactions without first bringing them into your accounting software. The first step is to connect your business bank and credit card accounts to FreshBooks. This feature automatically imports your transactions, saving you countless hours of manual data entry and creating the foundation for the reconciliation process.
Here’s how to set up the connection:
With your account connected, you'll see a feed of your banking transactions that are waiting to be categorized and matched to your bookkeeping records.
Once your transactions are flowing into FreshBooks, you can perform the actual reconciliation. It’s best practice to do this monthly, as soon as your bank statement for the period is available. Have your official bank statement (either a paper copy or a PDF) open and ready.
In the main navigation menu on the left side, go to the "Accounting" section. A sub-menu will appear; click on "Bank Reconciliation." This is your command center for the entire process.
On the Bank Reconciliation screen, you'll first be prompted to select a few key details:
This is arguably the most critical step. Look at your official bank statement and find the "Ending Balance" or "Closing Balance." Enter this exact figure into the "Statement End Balance" field in FreshBooks. This balance is your target; the goal is to make your FreshBooks transactions match this number precisely.
After entering the balance and date, click "Go." FreshBooks will now present the main reconciliation screen.
The reconciliation screen in FreshBooks is typically split into two main sections: payments (money out) and deposits (money in). FreshBooks automatically checks off items that it has matched between your bank data and your bookkeeping entries (like invoice payments or logged expenses).
Your job is to go through the list and confirm these matches are correct, as well as manually match any items FreshBooks might have missed. As you check off items, you will see the “Reconciliation Summary” on the right-hand side update in real-time. It shows:
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It's rare for a reconciliation to be perfect on the first try, especially if you have a high transaction volume. Don’t panic if your "Difference" isn’t zero yet. Here’s how to troubleshoot the most common issues directly from the reconciliation screen.
Your bank statement often includes items that you haven't recorded in FreshBooks yet, like monthly service fees, interest earned, or merchant processing fees.
You may have written checks that haven't been cashed or deposited yet. These will appear as outstanding expenses on your books but aren’t on your bank statement.
The Problem: You may accidentally import a transaction twice, resulting in a discrepancy.
Bank reconciliation might seem tedious, but it’s critical in ensuring accurate financial management. Regular reconciliations help you maintain an up-to-date understanding of your company’s finances, safeguard against fraud, and ensure smooth operations. With a proper system like FreshBooks, the process becomes more streamlined, allowing you to focus on what matters most—running and growing your business.
Written by Feather Team
Published on December 25, 2025